Equipe MAB - LIRMM Information Genomique et Structurale
A new version of phylogeny.fr is available.
Please try it: NGphylogeny.fr.
Advanced Mode
Alignment
MUSCLESettings:
Run mode: full processing mode
 doc
->
Curation
GblocksSettings:
Min. seq. for flank pos.: 85%
Max. contig. nonconserved pos.: 8
Min. block length: 10
Gaps in final blocks: no
 doc
->
Phylogeny
PhyMLSettings:
Model: Default
Statistical test: alrt
Number of categories: 4
Gamma: estimated
Invariable sites: estimated
 doc
->
Tree Rendering
TreeDynSettings:
Conformation: rectangular
Legend: displayed
Branch annotation: bootstrap
Font: Times 10 normal
 doc
Help ?

Workflow Settings


Name of the analysis Name length is limited to 20 characters (optional):

Choose processing steps to run:

Multiple Alignment: MUSCLE

Alignment curation: Gblocks

Construction of phylogenetic tree: PhyML

Visualisation of phylogenetic tree: TreeDyn


Run workflow:

all at onceSet the parameters before, and run the whole process. step by stepControl/validate the results of each program before going through the next step.





Genopole Marseille-Nice CNRSCentre
National
de la
Recherche
Scientifique 		Genopole Montpellier-Languedoc-Roussillon
Valid XHTML 1.0 Transitional