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Phylogeny.fr
Robust Phylogenetic Analysis For The Non-Specialist
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Phylogeny.fr is a free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.

Phylogeny.fr runs and connects various bioinformatics programs to reconstruct a robust phylogenetic tree from a set of sequences.

If you use this site, please cite:
doc  Dereeper A.*, Guignon V.*, Blanc G., Audic S., Buffet S., Chevenet F., Dufayard J.F., Guindon S., Lefort V., Lescot M., Claverie J.M., Gascuel O. Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. Epub 2008 Apr 19. (PubMed) *: joint first authors
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* Phylogeny analysis

"One Click"
Paste your set of sequences and let the software make decisions on your behalf (Each step is optimized for your data).
"Advanced"
Manually set parameters for the various steps.
"A la Carte"
Create your own phylogeny workflow using more programs available.

* Explore your sequence neighbors

Paste your single sequence, run Blastall and explore its homologous sequences.

* Online phylogeny programs

Direct access to the individual tools available on this server.
Multiple Alignment:Phylogeny:Tree viewers:Utilities:
MUSCLE PhyML TreeDyn Gblocks
T-Coffee / 3DCoffee TNT Drawgram Jalview
ClustalW BioNJ Drawtree Readseq
ProbCons MrBayes ATV (A Tree Viewer) Built-in converter

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