"One Click" Mode
Alignment
MUSCLESettings:
Run mode: full processing mode
doc
->
Phylogeny
PhyMLSettings:
Model: Default
Statistical test: alrt
Number of categories: 4
Gamma: estimated
Invariable sites: estimated
doc
->
Tree Rendering
TreeDynSettings:
Conformation: rectangular
Legend: displayed
Branch annotation: bootstrap
Font: Times 10 normal
doc
Alignment
MUSCLESettings:
Run mode: full processing mode
doc
->
Curation
GblocksSettings:
Min. seq. for flank pos.: 85%
Max. contig. nonconserved pos.: 8
Min. block length: 10
Gaps in final blocks: no
doc
->
Phylogeny
PhyMLSettings:
Model: Default
Statistical test: alrt
Number of categories: 4
Gamma: estimated
Invariable sites: estimated
doc
->
Tree Rendering
TreeDynSettings:
Conformation: rectangular
Legend: displayed
Branch annotation: bootstrap
Font: Times 10 normal
doc
Help ?


User Inputs
↓
 
Alignment
MUSCLE doc

Settings:
Run mode: full processing mode
↓
 
Curation
Gblocks doc

Settings:
Min. seq. for flank pos.: 85%
Max. contig. nonconserved pos.: 8
Min. block length: 10
Gaps in final blocks: no
↓
 
Phylogeny
PhyML doc

Settings:
Model: Default
Statistical test: alrt
Number of categories: 4
Gamma: estimated
Invariable sites: estimated
↓
 
Tree Rendering
TreeDyn doc

Settings:
Conformation: rectangular
Legend: displayed
Branch annotation: bootstrap
Font: Times 10 normal

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